Amanda Randles
Overview:
My research in biomedical simulation and high-performance computing focuses on the development of new computational tools that we use to provide insight into the localization and development of human diseases ranging from atherosclerosis to cancer.
Positions:
Alfred Winborne and Victoria Stover Mordecai Assistant Professor of Biomedical Sciences
Biomedical Engineering
Pratt School of Engineering
Assistant Professor of Biomedical Engineering
Biomedical Engineering
Pratt School of Engineering
Assistant Professor in the Thomas Lord Department of Mechanical Engineering and Materials Science
Thomas Lord Department of Mechanical Engineering and Materials Science
Pratt School of Engineering
Assistant Professor of Computer Science
Computer Science
Trinity College of Arts & Sciences
Member of the Duke Cancer Institute
Duke Cancer Institute
School of Medicine
Education:
Ph.D. 2013
Harvard University
Grants:
Student Support: IEEE Cluster 2018 Conference
Administered By
Biomedical Engineering
Awarded By
National Science Foundation
Role
Principal Investigator
Start Date
End Date
3D Bioprinted Aneurysm for Intervention Modeling Validation
Administered By
Biomedical Engineering
Awarded By
Lawrence Livermore National Laboratory
Role
Principal Investigator
Start Date
End Date
Toward coupled multiphysics models of hemodynamics on leadership systems
Administered By
Biomedical Engineering
Awarded By
National Institutes of Health
Role
Principal Investigator
Start Date
End Date
Interactive virtual reality cardiovascular visualizations: User study for clinicians - Harvey Shi award
Administered By
Biomedical Engineering
Awarded By
Sigma Xi
Role
Principal Investigator
Start Date
End Date
ORNL Joint Faculty Appointment for Amanda Randles
Administered By
Biomedical Engineering
Role
Principal Investigator
Start Date
End Date
Publications:
The role of extended reality for planning coronary artery bypass graft surgery
Immersive visual displays are becoming more common in the diagnostic imaging and pre-procedural planning of complex cardiology revascularization surgeries. One such procedure is coronary artery bypass grafting (CABG) surgery, which is a gold standard treat-ment for patients with advanced coronary heart disease. Treatment planning of the CABG surgery can be aided by extended reality (XR) displays as they are known for offering advantageous visual-ization of spatially heterogeneous and complex tasks. Despite the benefits of XR, it remains unknown whether clinicians will benefit from higher visual immersion offered by XR. In order to assess the impact of increased immersion as well as the latent factor of geometrical complexity, a quantitative user evaluation (n=14) was performed with clinicians of advanced cardiology training simulating CABG placement on sixteen 3D arterial tree models derived from 6 patients two levels of anatomic complexity. These arterial models were rendered on 3D/XR and 2D display modes with the same tactile interaction input device. The findings of this study reveal that compared to a monoscopic 2D display, the greater visual immersion of 3D/XR does not significantly alter clinician accuracy in the task of bypass graft placement. Latent factors such as arterial complexity and clinical experience both influence the accuracy of graft placement. In addition, an anatomically less complex model
Authors
Vardhan, M; Shi, H; Urick, D; Patel, M; Leopold, JA; Randles, A
MLA Citation
Vardhan, M., et al. “The role of extended reality for planning coronary artery bypass graft surgery.” Proceedings 2022 Ieee Visualization Conference Short Papers, Vis 2022, 2022, pp. 115–19. Scopus, doi:10.1109/VIS54862.2022.00032.
URI
https://scholars.duke.edu/individual/pub1562680
Source
scopus
Published In
Proceedings 2022 Ieee Visualization Conference Short Papers, Vis 2022
Published Date
Start Page
115
End Page
119
DOI
10.1109/VIS54862.2022.00032
Correction to: Investigating the Role of VR in a Simulation-Based Medical Planning System for Coronary Interventions (Medical Image Computing and Computer Assisted Intervention – MICCAI 2019, LNCS 11768, 10.1007/978-3-030-32254-0_41)
The original version of this chapter was revised. The spelling of the last author’s name was corrected to Amanda Randles.
Authors
Vardhan, M; Shi, H; Gounley, J; Chen, SJ; Kahn, A; Leopold, J; Randles, A
MLA Citation
Vardhan, M., et al. Correction to: Investigating the Role of VR in a Simulation-Based Medical Planning System for Coronary Interventions (Medical Image Computing and Computer Assisted Intervention – MICCAI 2019, LNCS 11768, 10.1007/978-3-030-32254-0_41). Vol. 11768 LNCS, 2019, p. C1. Scopus, doi:10.1007/978-3-030-32254-0_77.
URI
https://scholars.duke.edu/individual/pub1569633
Source
scopus
Volume
11768 LNCS
Published Date
Start Page
C1
DOI
10.1007/978-3-030-32254-0_77
Effect of constitutive law on the erythrocyte membrane response to large strains
Three constitutive laws, that is the Skalak, neo-Hookean and Yeoh laws, commonly employed for describing the erythrocyte membrane mechanics are theoretically analyzed and numerically investigated to assess their accuracy for capturing erythrocyte deformation characteristics and morphology. Particular emphasis is given to the nonlinear deformation regime, where it is known that the discrepancies between constitutive laws are most prominent. Hence, the experiments of optical tweezers and micropipette aspiration are considered here, for which relationships between the individual shear elastic moduli of the constitutive laws can also be established through analysis of the tension-deformation relationship. All constitutive laws were found to adequately predict the axial and transverse deformations of a red blood cell subjected to stretching with optical tweezers for a constant shear elastic modulus value. As opposed to Skalak law, the neo-Hookean and Yeoh laws replicated the erythrocyte membrane folding, that has been experimentally observed, with the trade-off of sustaining significant area variations. For the micropipette aspiration, the suction pressure-aspiration length relationship could be excellently predicted for a fixed shear elastic modulus value only when Yeoh law was considered. Importantly, the neo-Hookean and Yeoh laws reproduced the membrane wrinkling at suction pressures close to those experimentally measured. None of the constitutive laws suffered from membrane area compressibility in the micropipette aspiration case.
Authors
Pepona, M; Gounley, J; Randles, A
MLA Citation
Pepona, M., et al. “Effect of constitutive law on the erythrocyte membrane response to large strains.” Computers and Mathematics With Applications, vol. 132, Feb. 2023, pp. 145–60. Scopus, doi:10.1016/j.camwa.2022.12.009.
URI
https://scholars.duke.edu/individual/pub1562679
Source
scopus
Published In
Computers & Mathematics With Applications
Volume
132
Published Date
Start Page
145
End Page
160
DOI
10.1016/j.camwa.2022.12.009
High Performance Adaptive Physics Refinement to Enable Large-Scale Tracking of Cancer Cell Trajectory
The ability to track simulated cancer cells through the circulatory system, important for developing a mechanistic understanding of metastatic spread, pushes the limits of today's supercomputers by requiring the simulation of large fluid volumes at cellular-scale resolution. To overcome this challenge, we introduce a new adaptive physics refinement (APR) method that captures cellular-scale interaction across large domains and leverages a hybrid CPU-GPU approach to maximize performance. Through algorithmic advances that integrate multi-physics and multi-resolution models, we establish a finely resolved window with explicitly modeled cells coupled to a coarsely resolved bulk fluid domain. In this work we present multiple validations of the APR framework by comparing against fully resolved fluid-structure interaction methods and employ techniques, such as latency hiding and maximizing memory bandwidth, to effectively utilize heterogeneous node architectures. Collectively, these computational developments and performance optimizations provide a robust and scalable framework to enable system-level simulations of cancer cell transport.
Authors
Puleri, DF; Roychowdhury, S; Balogh, P; Gounley, J; Draeger, EW; Ames, J; Adebiyi, A; Chidyagwai, S; Hernandez, B; Lee, S; Moore, SV; Vetter, JS; Randles, A
MLA Citation
Puleri, D. F., et al. “High Performance Adaptive Physics Refinement to Enable Large-Scale Tracking of Cancer Cell Trajectory.” Proceedings Ieee International Conference on Cluster Computing, Iccc, vol. 2022-September, 2022, pp. 230–42. Scopus, doi:10.1109/CLUSTER51413.2022.00036.
URI
https://scholars.duke.edu/individual/pub1555312
Source
scopus
Published In
Proceedings Ieee International Conference on Cluster Computing, Iccc
Volume
2022-September
Published Date
Start Page
230
End Page
242
DOI
10.1109/CLUSTER51413.2022.00036
The Role of Immersion for Improving Extended Reality Analysis of Personalized Flow Simulations.
<h4>Purpose</h4>Computational models of flow in patient-derived arterial geometries have become a key paradigm of biomedical research. These fluid models are often challenging to visualize due to high spatial heterogeneity and visual complexity. Virtual immersive environments can offer advantageous visualization of spatially heterogeneous and complex systems. However, as different VR devices offer varying levels of immersion, there remains a crucial lack of understanding regarding what level of immersion is best suited for interactions with patient-specific flow models.<h4>Methods</h4>We conducted a quantitative user evaluation with multiple VR devices testing an important use of hemodynamic simulations-analysis of surface parameters within complex patient-specific geometries. This task was compared for the semi-immersive zSpace 3D monitor and the fully immersive HTC Vive system.<h4>Results</h4>The semi-immersive device was more accurate than the fully immersive device. The two devices showed similar results for task duration and performance (accuracy/duration). The accuracy of the semi-immersive device was also higher for arterial geometries of greater complexity and branching.<h4>Conclusion</h4>This assessment demonstrates that the level of immersion plays a significant role in the accuracy of assessing arterial flow models. We found that the semi-immersive VR device was a generally optimal choice for arterial visualization.
Authors
Shi, H; Vardhan, M; Randles, A
MLA Citation
Shi, Harvey, et al. “The Role of Immersion for Improving Extended Reality Analysis of Personalized Flow Simulations.” Cardiovascular Engineering and Technology, vol. 14, no. 2, Apr. 2023, pp. 194–203. Epmc, doi:10.1007/s13239-022-00646-y.
URI
https://scholars.duke.edu/individual/pub1557016
PMID
36385239
Source
epmc
Published In
Cardiovascular Engineering and Technology
Volume
14
Published Date
Start Page
194
End Page
203
DOI
10.1007/s13239-022-00646-y
Research Areas:
Aortic Coarctation
Atherosclerosis
Biomechanical Phenomena
Biomechanics
Biophysics
Cancer
Cancer cells
Cardiovascular Diseases
Computational Biology
Computational fluid dynamics
Computer Simulation
Fluid mechanics
Hemodynamics
High performance computing
Lattice Boltzmann methods
Metastasis
Multiscale modeling
Muser Mentor
Parallel algorithms
Parallel computers

Alfred Winborne and Victoria Stover Mordecai Assistant Professor of Biomedical Sciences
Contact:
Box 90281, Durham, NC 27708
Wilkinson Building, Room No. 325, 534 Research Drive, Durham, NC 27708